Chromothripsis-associated chromosome 21 amplification orchestrates transformation to blast-phase MPN through targetable overexpression of DYRK1A

Charlotte K Brierley, Bon Ham Yip, Giulia Orlando, Jeremy Wen, Sean Wen, Harsh Goyal, Max Levine, G Maria Jakobsdottir, Avraam Tapinos, Alex J Cornish, Antonio Rodriguez-Romera, Alba Rodriguez-Meira, Matthew Bashton, Angela Hamblin, Sally Ann Clark, Joseph C Hamley, Olivia Fox, Madalina Giurgiu, Jennifer O'Sullivan, Lauren MurphyAssunta Adamo, Aude Anais Olijnik, Anitria Cotton, Emily Hendrix, Shilpa Narina, Shondra M Pruett-Miller, Amir Enshaei, Claire Harrison, Mark Drummond, Steven Knapper, Ayalew Tefferi, Iléana Antony-Debré, James Davies, Anton G Henssen, Supat Thongjuea, David C Wedge, Stefan N Constantinescu, Elli Papaemmanuil, Bethan Psaila, John D Crispino, Adam J Mead

Research output: Contribution to journalArticlepeer-review

Abstract

Chromothripsis, the chaotic shattering and repair of chromosomes, is common in cancer. Whether chromothripsis generates actionable therapeutic targets remains an open question. In a cohort of 64 patients in blast phase of a myeloproliferative neoplasm (BP-MPN), we describe recurrent amplification of a region of chromosome 21q ('chr. 21amp') in 25%, driven by chromothripsis in a third of these cases. We report that chr. 21amp BP-MPN has a particularly aggressive and treatment-resistant phenotype. DYRK1A, a serine threonine kinase, is the only gene in the 2.7-megabase minimally amplified region that showed both increased expression and chromatin accessibility compared with non-chr. 21amp BP-MPN controls. DYRK1A is a central node at the nexus of multiple cellular functions critical for BP-MPN development and is essential for BP-MPN cell proliferation in vitro and in vivo, and represents a druggable axis. Collectively, these findings define chr. 21amp as a prognostic biomarker in BP-MPN, and link chromothripsis to a therapeutic target.

Original languageEnglish
Pages (from-to)1478-1492
Number of pages15
JournalNature Genetics
Volume57
Issue number6
DOIs
Publication statusPublished - Jun 2025

Keywords

  • Humans
  • Dyrk Kinases
  • Protein Serine-Threonine Kinases/genetics
  • Protein-Tyrosine Kinases/genetics
  • Chromothripsis
  • Chromosomes, Human, Pair 21/genetics
  • Myeloproliferative Disorders/genetics
  • Female
  • Male
  • Blast Crisis/genetics
  • Cell Transformation, Neoplastic/genetics
  • Gene Amplification
  • Middle Aged
  • Cell Proliferation/genetics
  • Animals
  • Mice

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